Usage
$ tunel run-app <server> slurm/socket/jupyter
Arguments
| Name | Description | Split By |
|---|---|---|
| workdir | Working directory for the notebook | NA |
| jupyterlab | Try running jupyterlab instead (e,g. set to true to enable) | NA |
| modules | comma separated list of modules to load | , |
If split by is provided, this means the argument takes a list, and you should use this as a delimiter.
Needs
- socket
Scripts
jupyter.sbatch
This app uses the slurm launcher by default.
#!/bin/bash
JOB_NAME="{{ jobname }}"
SOCKET_DIR="{{ scriptdir }}"
mkdir -p ${SOCKET_DIR}
# Set WORKDIR, first to args.workdir, then settings.yml workdir, then $HOME
{% include "bash/set-workdir.sh" %}
cd $WORKDIR
echo "Job is ${JOB_NAME}"
echo "Socket directory is ${SOCKET_DIR}"
echo "Notebook working directory is ${WORKDIR}"
# Create .local folder for default modules, if doesn't exist
{% include "bash/python/create-local.sh" %}
# Remove socket if exists
{% include "bash/socket/set-socket.sh" %}
# Load modules requested by user
{% for module in args.modules %}module load {{ module }} || printf "Could not load {{ module }}\n"
{% endfor %}
# Add variables to PATH
{% for path in paths %}export PATH={{ path }}:${PATH}
{% endfor %}
printf "jupyter notebook --no-browser --sock ${SOCKET}\n"
{% if args.jupyterlab %}export JUPYTER_ENABLE_LAB=yes{% endif %}
jupyter {% if args.jupyterlab %}lab{% else %}notebook{% endif %} --no-browser --sock ${SOCKET}
Have any questions, or want to request a new app or launcher? Ask us!